PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_59195_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 119aa    MW: 14035.4 Da    PI: 10.1012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_59195_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1961110255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++  +++++g
  cra_locus_59195_iso_2_len_356_ver_3  61 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 110
                                          6********.**********954...3************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-3061118No hitNo description
PROSITE profilePS5103223.9261118IPR001471AP2/ERF domain
SMARTSM003801.7E-3261119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3261118IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2261118IPR016177DNA-binding domain
PRINTSPR003671.1E-116273IPR001471AP2/ERF domain
PfamPF008471.3E-1162110IPR001471AP2/ERF domain
PRINTSPR003671.1E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
HSKQPLRSKF IDLDDEFEAD FQDFKDYSDD DEVKPFDFKS VKSVDSNCEA DKSSKRKRKN  60
QYRGIRQRPW GKWAAEIRDP RKGIRVWLGT FNSAEEAARA YDVEARRIRG KKAKVNFPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2261118563ATERF1
3gcc_A3e-2261118563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305599.11e-68ethylene-responsive transcription factor RAP2-12-like
SwissprotQ6K7E63e-41ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM1A1E22e-68M1A1E2_SOLTU; Ethylene responsive factor 1
STRINGPGSC0003DMT4000125475e-68(Solanum tuberosum)